GENSCAN 1.0 Date run: 25-Nov-104 Time: 00:33:05 Sequence IL29 : 138538 bp : 49.36% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.07 PlyA - 1508 1503 6 1.05 1.06 Term - 6399 5989 411 0 0 68 55 83 0.035 -1.76 1.05 Intr - 18058 17882 177 1 0 137 62 165 0.390 18.92 1.04 Intr - 18395 18318 78 2 0 99 94 43 0.954 5.75 1.03 Intr - 18983 18864 120 2 0 104 49 27 0.516 1.09 1.02 Intr - 23235 23093 143 1 2 55 76 47 0.625 0.27 1.01 Init - 23614 23467 148 1 1 96 13 61 0.614 -0.25 1.00 Prom - 24114 24075 40 -5.16 2.13 PlyA - 24578 24573 6 1.05 2.12 Term - 24832 24734 99 1 0 132 46 85 0.812 6.83 2.11 Intr - 25009 24926 84 1 0 122 113 -13 0.959 4.62 2.10 Intr - 25259 25110 150 2 0 149 56 129 0.524 16.16 2.09 Intr - 25596 25519 78 0 0 99 94 76 0.998 9.05 2.08 Intr - 26094 25890 205 2 1 84 64 212 0.113 17.60 2.07 Intr - 28333 28278 56 1 2 90 7 103 0.174 0.18 2.06 Intr - 28751 28491 261 2 0 98 101 166 0.998 16.58 2.05 Intr - 28953 28810 144 0 0 119 66 243 0.969 25.68 2.04 Intr - 29097 29026 72 0 0 85 85 41 0.866 3.10 2.03 Intr - 29617 29531 87 1 0 9 102 204 0.896 14.07 2.02 Intr - 30225 29950 276 0 0 39 49 175 0.763 6.41 2.01 Init - 36371 36168 204 2 0 83 34 157 0.282 8.65 2.00 Prom - 43162 43123 40 -4.66 3.00 Prom + 44327 44366 40 -7.86 3.01 Init + 45484 45609 126 0 0 70 -5 333 0.998 20.36 3.02 Intr + 45711 45959 249 2 0 -3 39 167 0.519 0.33 3.03 Intr + 46067 46138 72 1 0 91 85 5 0.515 0.10 3.04 Intr + 46202 46354 153 1 0 70 66 181 0.712 14.37 3.05 Intr + 46413 46478 66 2 0 95 52 79 0.505 4.10 3.06 Intr + 46821 46876 56 2 2 90 7 58 0.108 -4.32 3.07 Intr + 49756 49960 205 1 1 99 64 202 0.140 18.10 3.08 Intr + 50254 50331 78 0 0 99 94 21 0.891 3.55 3.09 Intr + 50590 50766 177 0 0 149 62 192 0.527 22.82 3.10 Intr + 50840 50923 84 1 0 122 113 2 0.985 6.12 3.11 Term + 51017 51115 99 1 0 132 46 71 0.887 5.43 3.12 PlyA + 51271 51276 6 1.05 4.00 Prom + 52852 52891 40 -5.16 4.01 Init + 53705 53875 171 1 0 48 76 46 0.095 -1.16 4.02 Term + 61676 61825 150 1 0 -15 39 259 0.748 8.61 4.03 PlyA + 62749 62754 6 1.05 5.00 Prom + 73732 73771 40 -3.96 5.01 Init + 77524 77694 171 0 0 84 97 145 0.996 12.67 5.02 Intr + 77907 77984 78 2 0 106 99 11 0.931 3.75 5.03 Intr + 79066 79209 144 0 0 145 56 155 0.804 18.48 5.04 Intr + 79315 79398 84 0 0 126 113 6 0.991 6.92 5.05 Term + 79493 79618 126 1 0 149 47 122 0.999 12.48 5.06 PlyA + 79754 79759 6 1.05 6.03 PlyA - 81015 81010 6 1.05 6.02 Term - 89644 88735 910 0 1 123 53 1243 0.662 116.05 6.01 Init - 96438 95033 1406 0 2 100 94 2376 0.995 227.61 6.00 Prom - 104034 103995 40 -6.26 7.09 PlyA - 106075 106070 6 1.05 7.08 Term - 108275 108114 162 2 0 111 46 16 0.329 -2.36 7.07 Intr - 110175 110102 74 1 2 128 26 68 0.596 3.73 7.06 Intr - 110728 110646 83 0 2 78 72 106 0.868 7.28 7.05 Intr - 114228 114179 50 0 2 96 68 31 0.823 -0.62 7.04 Intr - 116412 116333 80 1 2 70 77 98 0.727 6.17 7.03 Intr - 116633 116537 97 2 1 72 78 184 0.990 15.38 7.02 Intr - 123684 123525 160 2 1 1 40 141 0.602 0.59 7.01 Init - 124203 124049 155 0 2 59 47 153 0.718 7.76 7.00 Prom - 127356 127317 40 -6.76 8.00 Prom + 130680 130719 40 -7.16 8.01 Init + 137996 138191 196 1 1 103 105 244 0.528 26.69 Predicted peptide sequence(s): >IL29|GENSCAN_predicted_peptide_1|358_aa MAPLSHPGALVPGSSVLHSPRDRAPSSSSPTGPHGSLEKPTDPSQKERTLTSSANTAVVC CCICNGFVLDARLVPRDVPDSWTWEYVMFHGTRDSADAALHPWDWPLSQLNSVPWSSGRN DTPDRAGNQKQPNPEQQEVSLLLKDCRCRSRLFPRTWDLRQLQVRERPVALEAELALTLK VLEVTADADPALGDVLDQLLHTLHNILSQLGASVSPRGPGTQPKSSLMKPMKRKDEFPSK LKNSGSMGLLCHHHSPKLPRYEAVNVLVFGVHGVGEGMNHLGAPGSFNCPLLWQHHFFKH LSLQSFTLAFSTLLCFLISTTCHPAPLQMHYFAIYFTEAAGWTFLISYLAPHLPCSLS >IL29|GENSCAN_predicted_peptide_2|571_aa MSFCSFFGGKVFQNHFEPGVYMCAKCGYELFPSRSKYTYSFPWPVFTKTIRSDSVAKRPE HNHPEVLKNEDKDNQGEAKKEETDSRNRDRDNLETECWRAAIPGTGQPRVEVLTPDWDPR GLGPALMLGKLALDGKARLQTPFSALRIKASMDRRGTVAQKAPRRCLLSHYRSLEPRTLA AAKALRDRYEEEALSWGQRNCSFRPRRDPPRPSSCARLRHVARGIADAQAVLSGLHRSEL LPGAGPILELLAAAGRDVAACAHGEPQRFANLSCLAEKPIQTGVGSSGCPEIRARVCGWE GHGQMQRGASSFAFSICLMSHLQLELARPGSSRKVPGAQKRRHKPRRADSPRCRKASVVF NLLRLLTSLSLCDTDMTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSL SPQELQAFKRAKDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVL EATADTDPALGDVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKE SPGCLEASVTFNLFRLLTRDLNCVASGDLCV >IL29|GENSCAN_predicted_peptide_3|454_aa MRPSVWAAVAAGLWVVCTVGAAIRQRCLLSHYRSLEPRTLAAGSCVLAPSRRLLYVRAHS SHHEIPAVPVVSANAGSGSVTKGALQGGLGSRSRAQGYAGGERDAIQPWFTPSGSSLVQY TTGTTAEEALSWRSRNCSVRPRRDPPRPSSPQSCARLRHVARSIADAQAVLSGLHRLELL PGASRILEPLAAAGRDVAACAHGEPQRFANLSCLAEKPIQTQDSPRCREASVIFNLLRLL TSLSLCDTDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQ AFKRAKDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADT DPALVDVLDQPLHTLHHILSQFRACVSRWGLGTQIQPQPTAGPRTRGRLHHWLYRLQEAP KKESPGCLEASVTFNLFRLLTRDLNCVASGDLCV >IL29|GENSCAN_predicted_peptide_4|106_aa MPVISFGNKVTSSANTVVVCCCICNGFVLDARLVPRDVPDSWTWEYVMFHGTRDSADEID NNQLRTVIEADSLTTTQEVAEELNVDHGPFYGCSAFEANRKGEKAP >IL29|GENSCAN_predicted_peptide_5|200_aa MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD LKYVADGNLCLRTSTHPEST >IL29|GENSCAN_predicted_peptide_6|771_aa MAPGPFSSALLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVP PAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHL DSNRLAEVRGDQLRGLGNLRHLILGNNQIRRVESAAFDAFLSTVEDLDLSYNNLEALPWE AVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGTGPK PPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPL ITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTIT TLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGAN DSAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDSLVYRMIPSTSQTFLV NDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAI GGVIVASVLVFIVLLMIRYKVYGDGDSRRVKGSRSLPRVSHVCSQTNGAGTGAAQAPALP AQDHYEALREVESQAAPAVAVEAKAMEAETASAEPEVVLGRSLGGSATSLCLLPSEETSG EESRAAVGPRRSRSGALEPPTSAPPTLALVPGGAAARPRPQQRYSFDGDYGALFQSHSYP RRARRTKRHRSTPHLDGAGGGAAGEDGDLGLGSARACLAFTSTEWMLESTV >IL29|GENSCAN_predicted_peptide_7|286_aa MRATLWNGRGVASEDYFWRQEEDGGFGAKGRGSARKAAGTHEGLEEATPREGLTASAFAA TAAARASSGHRRRRRPLSGPQAPLPPPAPTTAAAAAAAVALRHRASDSLVVCEVDPELTE KLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQVMGWGDWDWENISPEELKMELPERQP RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKAQSLKAG DGGGGGLETRGVIQLNGQGTPGLQRSERQRDSSKVMHLHDQMNTNS >IL29|GENSCAN_predicted_peptide_8|66_aa MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLES EANSAX