GENSCAN 1.0 Date run: 25-Nov-104 Time: 00:33:04 Sequence IL28B : 138538 bp : 49.36% C+G : Isochore 2 (43 - 51 C+G%) Parameter matrix: HumanIso.smat Predicted genes/exons: Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr.. ----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------ 1.01 Init - 543 348 196 0 1 103 105 244 0.528 26.69 1.00 Prom - 7859 7820 40 -7.16 2.00 Prom + 11183 11222 40 -6.76 2.01 Init + 14336 14490 155 1 2 59 47 153 0.718 7.76 2.02 Intr + 14855 15014 160 2 1 1 40 141 0.602 0.59 2.03 Intr + 21906 22002 97 2 1 72 78 184 0.990 15.38 2.04 Intr + 22127 22206 80 0 2 70 77 98 0.727 6.17 2.05 Intr + 24311 24360 50 1 2 96 68 31 0.823 -0.62 2.06 Intr + 27811 27893 83 1 2 78 72 106 0.868 7.28 2.07 Intr + 28364 28437 74 0 2 128 26 68 0.596 3.73 2.08 Term + 30264 30425 162 2 0 111 46 16 0.329 -2.36 2.09 PlyA + 31810 31815 6 1.05 3.00 Prom + 34505 34544 40 -6.26 3.01 Init + 42101 43506 1406 1 2 100 94 2376 0.995 227.61 3.02 Term + 48895 49804 910 1 1 123 53 1243 0.662 116.05 3.03 PlyA + 50521 50526 6 1.05 4.06 PlyA - 53223 53218 6 1.05 4.05 Term - 59046 58921 126 0 0 149 47 122 0.999 12.48 4.04 Intr - 59224 59141 84 1 0 126 113 6 0.991 6.92 4.03 Intr - 59473 59330 144 1 0 145 56 155 0.804 18.48 4.02 Intr - 60632 60555 78 2 0 106 99 11 0.931 3.75 4.01 Init - 61015 60845 171 1 0 84 97 145 0.996 12.67 4.00 Prom - 64807 64768 40 -3.96 5.03 PlyA - 64929 64924 6 1.05 5.02 Term - 76863 76714 150 0 0 -15 39 259 0.748 8.61 5.01 Init - 84834 84664 171 0 0 48 76 46 0.095 -1.16 5.00 Prom - 85687 85648 40 -5.16 6.12 PlyA - 87268 87263 6 1.05 6.11 Term - 87522 87424 99 0 0 132 46 71 0.887 5.43 6.10 Intr - 87699 87616 84 0 0 122 113 2 0.985 6.12 6.09 Intr - 87949 87773 177 1 0 149 62 192 0.527 22.82 6.08 Intr - 88285 88208 78 1 0 99 94 21 0.891 3.55 6.07 Intr - 88783 88579 205 0 1 99 64 202 0.140 18.10 6.06 Intr - 91718 91663 56 2 2 90 7 58 0.108 -4.32 6.05 Intr - 92126 92061 66 2 0 95 52 79 0.505 4.10 6.04 Intr - 92337 92185 153 0 0 70 66 181 0.712 14.37 6.03 Intr - 92472 92401 72 0 0 91 85 5 0.515 0.10 6.02 Intr - 92828 92580 249 2 0 -3 39 167 0.519 0.33 6.01 Init - 93055 92930 126 1 0 70 -5 333 0.998 20.36 6.00 Prom - 94212 94173 40 -7.86 7.00 Prom + 95377 95416 40 -4.66 7.01 Init + 102168 102371 204 2 0 83 34 157 0.282 8.65 7.02 Intr + 108314 108589 276 1 0 39 49 175 0.763 6.41 7.03 Intr + 108922 109008 87 0 0 9 102 204 0.896 14.07 7.04 Intr + 109442 109513 72 1 0 85 85 41 0.866 3.10 7.05 Intr + 109586 109729 144 1 0 119 66 243 0.969 25.68 7.06 Intr + 109788 110048 261 2 0 98 101 166 0.998 16.58 7.07 Intr + 110206 110261 56 0 2 90 7 103 0.174 0.18 7.08 Intr + 112445 112649 205 2 1 84 64 212 0.113 17.60 7.09 Intr + 112943 113020 78 1 0 99 94 76 0.998 9.05 7.10 Intr + 113280 113429 150 2 0 149 56 129 0.524 16.16 7.11 Intr + 113530 113613 84 0 0 122 113 -13 0.959 4.62 7.12 Term + 113707 113805 99 0 0 132 46 85 0.812 6.83 7.13 PlyA + 113961 113966 6 1.05 8.00 Prom + 114425 114464 40 -5.16 8.01 Init + 114925 115072 148 0 1 96 13 61 0.614 -0.25 8.02 Intr + 115304 115446 143 0 2 55 76 47 0.625 0.27 8.03 Intr + 119556 119675 120 2 0 104 49 27 0.516 1.09 8.04 Intr + 120144 120221 78 2 0 99 94 43 0.954 5.75 8.05 Intr + 120481 120657 177 0 0 137 62 165 0.390 18.92 8.06 Term + 132140 132550 411 1 0 68 55 83 0.035 -1.76 8.07 PlyA + 137031 137036 6 1.05 Predicted peptide sequence(s): >IL28B|GENSCAN_predicted_peptide_1|66_aa MMFRDQVGILAGWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLES EANSAX >IL28B|GENSCAN_predicted_peptide_2|286_aa MRATLWNGRGVASEDYFWRQEEDGGFGAKGRGSARKAAGTHEGLEEATPREGLTASAFAA TAAARASSGHRRRRRPLSGPQAPLPPPAPTTAAAAAAAVALRHRASDSLVVCEVDPELTE KLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQVMGWGDWDWENISPEELKMELPERQP RFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKAQSLKAG DGGGGGLETRGVIQLNGQGTPGLQRSERQRDSSKVMHLHDQMNTNS >IL28B|GENSCAN_predicted_peptide_3|771_aa MAPGPFSSALLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVAPTLTMLCAKTGLLFVP PAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIGQVAAGAFADLRALRALHL DSNRLAEVRGDQLRGLGNLRHLILGNNQIRRVESAAFDAFLSTVEDLDLSYNNLEALPWE AVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMTSNRLHKLPPDGLFLRSQGTGPK PPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCATPEHLTDRYFWSIPEEEFLCEPPL ITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWVAPDGRLLGNSSRTRVRGDGTLDVTIT TLRDSGTFTCIASNAAGEATAPVEVCVVPLPLMAPPPAAPPPLTEPGSSDIATPGRPGAN DSAAERRLVAAELTSNSVLIRWPAQRPVPGIRMYQVQYNSSVDDSLVYRMIPSTSQTFLV NDLAAGRAYDLCVLAVYDDGATALPATRVVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAI GGVIVASVLVFIVLLMIRYKVYGDGDSRRVKGSRSLPRVSHVCSQTNGAGTGAAQAPALP AQDHYEALREVESQAAPAVAVEAKAMEAETASAEPEVVLGRSLGGSATSLCLLPSEETSG EESRAAVGPRRSRSGALEPPTSAPPTLALVPGGAAARPRPQQRYSFDGDYGALFQSHSYP RRARRTKRHRSTPHLDGAGGGAAGEDGDLGLGSARACLAFTSTEWMLESTV >IL28B|GENSCAN_predicted_peptide_4|200_aa MAAAWTVVLVTLVLGLAVAGPVPTSKPTTTGKGCHIGRFKSLSPQELASFKKARDALEES LKLKNWSCSSPVFPGNWDLRLLQVRERPVALEAELALTLKVLEAAAGPALEDVLDQPLHT LHHILSQLQACIQPQPTAGPRPRGRLHHWLHRLQEAPKKESAGCLEASVTFNLFRLLTRD LKYVADGNLCLRTSTHPEST >IL28B|GENSCAN_predicted_peptide_5|106_aa MPVISFGNKVTSSANTVVVCCCICNGFVLDARLVPRDVPDSWTWEYVMFHGTRDSADEID NNQLRTVIEADSLTTTQEVAEELNVDHGPFYGCSAFEANRKGEKAP >IL28B|GENSCAN_predicted_peptide_6|454_aa MRPSVWAAVAAGLWVVCTVGAAIRQRCLLSHYRSLEPRTLAAGSCVLAPSRRLLYVRAHS SHHEIPAVPVVSANAGSGSVTKGALQGGLGSRSRAQGYAGGERDAIQPWFTPSGSSLVQY TTGTTAEEALSWRSRNCSVRPRRDPPRPSSPQSCARLRHVARSIADAQAVLSGLHRLELL PGASRILEPLAAAGRDVAACAHGEPQRFANLSCLAEKPIQTQDSPRCREASVIFNLLRLL TSLSLCDTDMTGDCTPVLVLMAAVLTVTGAVPVARLHGALPDARGCHIAQFKSLSPQELQ AFKRAKDALEESLLLKDCRCHSRLFPRTWDLRQLQVRERPMALEAELALTLKVLEATADT DPALVDVLDQPLHTLHHILSQFRACVSRWGLGTQIQPQPTAGPRTRGRLHHWLYRLQEAP KKESPGCLEASVTFNLFRLLTRDLNCVASGDLCV >IL28B|GENSCAN_predicted_peptide_7|571_aa MSFCSFFGGKVFQNHFEPGVYMCAKCGYELFPSRSKYTYSFPWPVFTKTIRSDSVAKRPE HNHPEVLKNEDKDNQGEAKKEETDSRNRDRDNLETECWRAAIPGTGQPRVEVLTPDWDPR GLGPALMLGKLALDGKARLQTPFSALRIKASMDRRGTVAQKAPRRCLLSHYRSLEPRTLA AAKALRDRYEEEALSWGQRNCSFRPRRDPPRPSSCARLRHVARGIADAQAVLSGLHRSEL LPGAGPILELLAAAGRDVAACAHGEPQRFANLSCLAEKPIQTGVGSSGCPEIRARVCGWE GHGQMQRGASSFAFSICLMSHLQLELARPGSSRKVPGAQKRRHKPRRADSPRCRKASVVF NLLRLLTSLSLCDTDMTGDCMPVLVLMAAVLTVTGAVPVARLRGALPDARGCHIAQFKSL SPQELQAFKRAKDALEESLLLKDCKCRSRLFPRTWDLRQLQVRERPVALEAELALTLKVL EATADTDPALGDVLDQPLHTLHHILSQLRACIQPQPTAGPRTRGRLHHWLHRLQEAPKKE SPGCLEASVTFNLFRLLTRDLNCVASGDLCV >IL28B|GENSCAN_predicted_peptide_8|358_aa MAPLSHPGALVPGSSVLHSPRDRAPSSSSPTGPHGSLEKPTDPSQKERTLTSSANTAVVC CCICNGFVLDARLVPRDVPDSWTWEYVMFHGTRDSADAALHPWDWPLSQLNSVPWSSGRN DTPDRAGNQKQPNPEQQEVSLLLKDCRCRSRLFPRTWDLRQLQVRERPVALEAELALTLK VLEVTADADPALGDVLDQLLHTLHNILSQLGASVSPRGPGTQPKSSLMKPMKRKDEFPSK LKNSGSMGLLCHHHSPKLPRYEAVNVLVFGVHGVGEGMNHLGAPGSFNCPLLWQHHFFKH LSLQSFTLAFSTLLCFLISTTCHPAPLQMHYFAIYFTEAAGWTFLISYLAPHLPCSLS